Paraview for MOHID - Revision history

Francisco: /* Required Software */

2019-07-12T14:49:44Z

‎Required Software

Francisco: /* Required Software */

2019-07-12T14:47:58Z

‎Required Software

Francisco: /* Opening HDF5 files */

2019-07-12T10:20:28Z

‎Opening HDF5 files

Francisco: /* Opening HDF5 files */

2019-07-12T10:05:23Z

‎Opening HDF5 files

Francisco: /* Opening HDF files */

2019-07-12T10:03:36Z

‎Opening HDF files

Francisco at 09:56, 12 July 2019

2019-07-12T09:56:49Z

Francisco at 09:54, 12 July 2019

2019-07-12T09:54:21Z

Francisco at 09:50, 12 July 2019

2019-07-12T09:50:52Z

Francisco at 09:48, 12 July 2019

2019-07-12T09:48:52Z

Francisco: Created page with " This page will describe how to open and visualize MOHID hdf and netcdf results using paraview software. = Required Software = Please install the latest version of Paraview..."

2019-07-12T09:46:44Z

Created page with " This page will describe how to open and visualize MOHID hdf and netcdf results using paraview software. = Required Software = Please install the latest version of Paraview..."

New page

This page will describe how to open and visualize MOHID hdf and netcdf results using paraview software.

= Required Software =

Please install the latest version of Paraview that can be found at https://www.paraview.org/download/

You will also need the Phyton V3 that can be obtained form the Miniconda distribution https://docs.conda.io/en/latest/miniconda.html

= Opening HDF files =

= Visualizing variables =

← Older revision		Revision as of 14:49, 12 July 2019
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	pip install h5py		pip install h5py
		+
		+	You will also need to download the package https://github.com/maretec/MOHID_python_tools

	= Opening HDF5 files =		= Opening HDF5 files =

@@ Line 8: / Line 8: @@
 Please install the latest version of Paraview that can be found at https://www.paraview.org/download/
-You will also need the Phyton V3 that can be obtained form the Miniconda distribution https://docs.conda.io/en/latest/miniconda.html
+You will also need the Phyton V3 that can be obtained form the Miniconda distribution https://docs.conda.io/en/latest/miniconda.html. It will be needed the h5py package, please open a Anaconda prompt and install it using the following instruction:
 = Opening HDF5 files =

← Older revision		Revision as of 10:20, 12 July 2019
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	It is needed to run the file RunWin.bat (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunWin.bat) or RunLinux.sh (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunLinux.sh) according to the operational system where the location of the TestFiles need to be edited. The tool also is able to glue files.		It is needed to run the file RunWin.bat (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunWin.bat) or RunLinux.sh (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunLinux.sh) according to the operational system where the location of the TestFiles need to be edited. The tool also is able to glue files.
		+
		+	Open using XDMF reader
		+
		+
		+	Scale Z should be negative to visualize 3D files due to the bathymetries being defined as positive values.
		+
		+	Visualization
		+	Surface - fill surface
		+	Points - show particules
		+
		+	To filter land, you need to use the threshold filter, then you select the variable and then the maximum value

	= Visualizing variables =		= Visualizing variables =

@@ Line 12: / Line 12: @@
 = Opening HDF5 files =
-To be able to open MOHID HDF5 in paraview it needs a descriptor file that is generated using a python tool that is located at https://github.com/maretec/MOHID_python_tools/tree/master/MXDMF
+To be able to open MOHID HDF5 in paraview it needs a descriptor file with the extension .xdmf that is generated using a python tool that is located at https://github.com/maretec/MOHID_python_tools/tree/master/MXDMF
 It is needed to run the file RunWin.bat (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunWin.bat) or RunLinux.sh (https://github.com/maretec/MOHID_python_tools/blob/master/MXDMF/run/RunLinux.sh) according to the operational system where the location of the TestFiles need to be edited. The tool also is able to glue files.
 = Visualizing variables =

@@ Line 2: / Line 2: @@
 This page will describe how to open and visualize MOHID HDF5 and NetCDF results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.
-HDF5 files from MOHID need to be obtained by using executable files compiled since February 2019. If earlier, HDF5 files need to be converted to NetCDF file using XXXXXXXXX.
+HDF5 files from MOHID need to be obtained by using executable files compiled since February 2019 that have included the field Corners3D. If earlier, HDF5 files need to be converted to NetCDF file using XXXXXXXXX.
 = Required Software =

← Older revision		Revision as of 09:54, 12 July 2019
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	This page will describe how to open and visualize MOHID HDF5 and NetCDF results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.		This page will describe how to open and visualize MOHID HDF5 and NetCDF results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.
		+
		+	HDF5 files from MOHID need to be obtained by using executable files compiled since February 2019. If earlier, HDF5 files need to be converted to NetCDF file using XXXXXXXXX.

	= Required Software =		= Required Software =

← Older revision		Revision as of 09:50, 12 July 2019
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−	This page will describe how to open and visualize MOHID ~~hdf~~ and ~~netcdf~~ results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.	+	This page will describe how to open and visualize MOHID HDF5 and NetCDF results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.

	= Required Software =		= Required Software =

← Older revision		Revision as of 09:48, 12 July 2019
Line 1:		Line 1:

−	This page will describe how to open and visualize MOHID hdf and netcdf results using ~~paraview~~ software.	+	This page will describe how to open and visualize MOHID hdf and netcdf results using the ParaView software. ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques.

	= Required Software =		= Required Software =